IL_1NKW_009

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUAGUAG*CGAACCC

Length

15 nucleotides

Bulged bases

1NKW|1|0|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NKW_009 not in the Motif Atlas

Homologous match to IL_7A0S_007

Geometric discrepancy: 0.2037

The information below is about IL_7A0S_007

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

1NKW|1|0|G|215
1NKW|1|0|U|216
1NKW|1|0|U|217
1NKW|1|0|A|218
1NKW|1|0|G|219
1NKW|1|0|U|220
1NKW|1|0|A|221
1NKW|1|0|G|222
*
1NKW|1|0|C|230
1NKW|1|0|G|231
1NKW|1|0|A|232
1NKW|1|0|A|233
1NKW|1|0|C|234
1NKW|1|0|C|235
1NKW|1|0|C|236

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain J

50S ribosomal protein L15