IL_1NKW_015

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NKW_015 not in the Motif Atlas

Geometric match to IL_7A0S_011

Geometric discrepancy: 0.1524

The information below is about IL_7A0S_011

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

1NKW|1|0|C|573
1NKW|1|0|C|574
1NKW|1|0|U|575
*
1NKW|1|0|A|584
1NKW|1|0|U|585
1NKW|1|0|G|586

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L15

Chain O

50S ribosomal protein L20

Chain P

50S ribosomal protein L21