IL_1NKW_020

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

1NKW|1|0|G|814, 1NKW|1|0|G|818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NKW_020 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.2568

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

1NKW|1|0|G|687
1NKW|1|0|A|688
1NKW|1|0|A|689
1NKW|1|0|A|690
1NKW|1|0|C|691
*
1NKW|1|0|G|812
1NKW|1|0|A|813
1NKW|1|0|G|814
1NKW|1|0|A|815
1NKW|1|0|U|816
1NKW|1|0|A|817
1NKW|1|0|G|818
1NKW|1|0|C|819

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain J

50S ribosomal protein L15