IL_1NKW_023

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAAAC*GCGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NKW_023 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.1754

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_06136.2

Basepair signature

cWW-tHS-cWW-tHS-tSH-tSH-cWW

Number of instances in this motif group

6

Unit IDs

1NKW|1|0|U|716
1NKW|1|0|G|717
1NKW|1|0|A|718
1NKW|1|0|A|719
1NKW|1|0|A|720
1NKW|1|0|C|721
*
1NKW|1|0|G|736
1NKW|1|0|C|737
1NKW|1|0|G|738
1NKW|1|0|G|739
1NKW|1|0|A|740
1NKW|1|0|G|741

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2