IL_1NKW_029

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGUU*AG

Length

6 nucleotides

Bulged bases

1NKW|1|0|U|859

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NKW_029 not in the Motif Atlas

Geometric match to IL_4V9F_021

Geometric discrepancy: 0.2304

The information below is about IL_4V9F_021

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

1NKW|1|0|U|857
1NKW|1|0|G|858
1NKW|1|0|U|859
1NKW|1|0|U|860
*
1NKW|1|0|A|944
1NKW|1|0|G|945

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L30