IL_1NKW_050

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUU*AAGUG

Length

9 nucleotides

Bulged bases

1NKW|1|0|G|1261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NKW_050 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3621

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

1NKW|1|0|C|1210
1NKW|1|0|G|1211
1NKW|1|0|U|1212
1NKW|1|0|U|1213
*
1NKW|1|0|A|1259
1NKW|1|0|A|1260
1NKW|1|0|G|1261
1NKW|1|0|U|1262
1NKW|1|0|G|1263

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain J

50S ribosomal protein L15

Chain O

50S ribosomal protein L20