IL_1NKW_054

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUAC*GAGU

Length

8 nucleotides

Bulged bases

1NKW|1|0|A|1233

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NKW_054 not in the Motif Atlas

Geometric match to IL_2O3V_003

Geometric discrepancy: 0.375

The information below is about IL_2O3V_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

1NKW|1|0|A|1231
1NKW|1|0|U|1232
1NKW|1|0|A|1233
1NKW|1|0|C|1234
*
1NKW|1|0|G|1241
1NKW|1|0|A|1242
1NKW|1|0|G|1243
1NKW|1|0|U|1244

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L20

Chain P

50S ribosomal protein L21