IL_1NKW_074

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GAAGAAG

Length

13 nucleotides

Bulged bases

1NKW|1|0|G|1716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NKW_074 not in the Motif Atlas

Geometric match to IL_4WF9_066

Geometric discrepancy: 0.2578

The information below is about IL_4WF9_066

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

1NKW|1|0|C|1703
1NKW|1|0|G|1704
1NKW|1|0|U|1705
1NKW|1|0|A|1706
1NKW|1|0|A|1707
1NKW|1|0|C|1708
*
1NKW|1|0|G|1713
1NKW|1|0|A|1714
1NKW|1|0|A|1715
1NKW|1|0|G|1716
1NKW|1|0|A|1717
1NKW|1|0|A|1718
1NKW|1|0|G|1719

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2