IL_1NKW_103

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAA*UGUAG

Length

8 nucleotides

Bulged bases

1NKW|1|0|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NKW_103 not in the Motif Atlas

Homologous match to IL_7A0S_080

Geometric discrepancy: 0.5974

The information below is about IL_7A0S_080

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

1NKW|1|0|C|2276
1NKW|1|0|A|2277
1NKW|1|0|A|2278
*
1NKW|1|0|U|2296
1NKW|1|0|G|2297
1NKW|1|0|U|2298
1NKW|1|0|A|2299
1NKW|1|0|G|2300

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain D

50S ribosomal protein L5

Chain M

50S ribosomal protein L18