3D structure

PDB id
1NKW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GUC*GGC
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1NKW_114 not in the Motif Atlas
Homologous match to IL_3MOJ_002
Geometric discrepancy: 0.5854
The information below is about IL_3MOJ_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_73028.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
5

Unit IDs

1NKW|1|0|G|2492
1NKW|1|0|U|2493
1NKW|1|0|C|2494
*
1NKW|1|0|G|2548
1NKW|1|0|G|2549
1NKW|1|0|C|2550

Current chains

Chain 0
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L3
Chain H
50S ribosomal protein L13

Coloring options:


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