IL_1NKW_119

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NKW_119 not in the Motif Atlas

Geometric match to IL_4V9F_019

Geometric discrepancy: 0.2559

The information below is about IL_4V9F_019

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

1NKW|1|0|C|2631
1NKW|1|0|U|2632
1NKW|1|0|A|2633
1NKW|1|0|G|2634
1NKW|1|0|U|2635
1NKW|1|0|A|2636
1NKW|1|0|C|2637
*
1NKW|1|0|G|2642
1NKW|1|0|G|2643
1NKW|1|0|A|2644
1NKW|1|0|C|2645
1NKW|1|0|C|2646
1NKW|1|0|G|2647

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6

Chain I

50S ribosomal protein L14