IL_1NKW_142

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUAAG*CGAUGG

Length

12 nucleotides

Bulged bases

1NKW|1|0|U|1392

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NKW_142 not in the Motif Atlas

Geometric match to IL_7A0S_098

Geometric discrepancy: 0.2928

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

1NKW|1|0|C|1363
1NKW|1|0|C|1364
1NKW|1|0|U|1365
1NKW|1|0|A|1366
1NKW|1|0|A|1367
1NKW|1|0|G|1368
*
1NKW|1|0|C|1389
1NKW|1|0|G|1390
1NKW|1|0|A|1391
1NKW|1|0|U|1392
1NKW|1|0|G|1393
1NKW|1|0|G|1394

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2