3D structure

PDB id
1NKW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GCACU*AAAC
Length
9 nucleotides
Bulged bases
1NKW|1|0|A|879, 1NKW|1|0|A|922, 1NKW|1|0|A|923
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1NKW_160 not in the Motif Atlas
Homologous match to IL_7A0S_029
Geometric discrepancy: 0.3969
The information below is about IL_7A0S_029
Detailed Annotation
C-loop with bulged stacked A's
Broad Annotation
C-loop
Motif group
IL_26222.2
Basepair signature
cWW-cWS-cSH-tWH-R-L-R-cWW
Number of instances in this motif group
6

Unit IDs

1NKW|1|0|G|877
1NKW|1|0|C|878
1NKW|1|0|A|879
1NKW|1|0|C|880
1NKW|1|0|U|881
*
1NKW|1|0|A|921
1NKW|1|0|A|922
1NKW|1|0|A|923
1NKW|1|0|C|924

Current chains

Chain 0
23S ribosomal RNA

Nearby chains

Chain 9
5S ribosomal RNA; 5S rRNA
Chain K
50S ribosomal protein L16

Coloring options:


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