IL_1NKW_170

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGCACG*UUCAG

Length

11 nucleotides

Bulged bases

1NKW|1|0|C|2824, 1NKW|1|0|C|2842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NKW_170 not in the Motif Atlas

Homologous match to IL_7A0S_101

Geometric discrepancy: 0.2805

The information below is about IL_7A0S_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

1NKW|1|0|U|2822
1NKW|1|0|G|2823
1NKW|1|0|C|2824
1NKW|1|0|A|2825
1NKW|1|0|C|2826
1NKW|1|0|G|2827
*
1NKW|1|0|U|2840
1NKW|1|0|U|2841
1NKW|1|0|C|2842
1NKW|1|0|A|2843
1NKW|1|0|G|2844

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L17

Chain N

50S ribosomal protein L19