IL_1NWY_007
3D structure
- PDB id
- 1NWY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGAACUGA*UCUCAGUAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1NWY_007 not in the Motif Atlas
- Geometric match to IL_3DIL_003
- Geometric discrepancy: 0.3166
- The information below is about IL_3DIL_003
- Detailed Annotation
- 9x8 Sarcin-Ricin with GA cWW pair; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_34470.3
- Basepair signature
- cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
1NWY|1|0|G|165
1NWY|1|0|G|166
1NWY|1|0|A|167
1NWY|1|0|A|168
1NWY|1|0|C|169
1NWY|1|0|U|170
1NWY|1|0|G|171
1NWY|1|0|A|172
*
1NWY|1|0|U|177
1NWY|1|0|C|178
1NWY|1|0|U|179
1NWY|1|0|C|180
1NWY|1|0|A|181
1NWY|1|0|G|182
1NWY|1|0|U|183
1NWY|1|0|A|184
1NWY|1|0|C|185
Current chains
- Chain 0
- 23S RIBOSOMAL RRNA
Nearby chains
- Chain J
- ribosomal protein L15
- Chain Y
- ribosomal protein L31
Coloring options: