IL_1NWY_009

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUAGUAG*CGAACCC

Length

15 nucleotides

Bulged bases

1NWY|1|0|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NWY_009 not in the Motif Atlas

Homologous match to IL_7A0S_007

Geometric discrepancy: 0.2

The information below is about IL_7A0S_007

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

1NWY|1|0|G|215
1NWY|1|0|U|216
1NWY|1|0|U|217
1NWY|1|0|A|218
1NWY|1|0|G|219
1NWY|1|0|U|220
1NWY|1|0|A|221
1NWY|1|0|G|222
*
1NWY|1|0|C|230
1NWY|1|0|G|231
1NWY|1|0|A|232
1NWY|1|0|A|233
1NWY|1|0|C|234
1NWY|1|0|C|235
1NWY|1|0|C|236

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain 3

ribosomal protein L35

Chain J

ribosomal protein L15