IL_1NWY_047

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CAG,CUG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NWY_047 not in the Motif Atlas

Geometric match to IL_5Y7M_007

Geometric discrepancy: 0.1899

The information below is about IL_5Y7M_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

1NWY|1|0|C|1214
1NWY|1|0|A|1215
1NWY|1|0|G|1216
*
1NWY|1|0|C|1256
1NWY|1|0|U|1257
1NWY|1|0|G|1258

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain C

ribosomal protein L4

Chain J

ribosomal protein L15

Chain O

ribosomal protein L20