IL_1NWY_050

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUAC*GAGU

Length

8 nucleotides

Bulged bases

1NWY|1|0|A|1233

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NWY_050 not in the Motif Atlas

Geometric match to IL_2O3V_003

Geometric discrepancy: 0.3751

The information below is about IL_2O3V_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34618.2

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

6

Unit IDs

1NWY|1|0|A|1231
1NWY|1|0|U|1232
1NWY|1|0|A|1233
1NWY|1|0|C|1234
*
1NWY|1|0|G|1241
1NWY|1|0|A|1242
1NWY|1|0|G|1243
1NWY|1|0|U|1244

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain O

ribosomal protein L20

Chain P

ribosomal protein L21