IL_1NWY_087

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUAG*CGGGU

Length

9 nucleotides

Bulged bases

1NWY|1|0|G|2217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NWY_087 not in the Motif Atlas

Geometric match to IL_4KZD_002

Geometric discrepancy: 0.3351

The information below is about IL_4KZD_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

1NWY|1|0|A|2063
1NWY|1|0|U|2064
1NWY|1|0|A|2065
1NWY|1|0|G|2066
*
1NWY|1|0|C|2215
1NWY|1|0|G|2216
1NWY|1|0|G|2217
1NWY|1|0|G|2218
1NWY|1|0|U|2219

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain A

ribosomal protein L2

Chain Y

ribosomal protein L31