IL_1NWY_110

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

1NWY|1|0|G|2757, 1NWY|1|0|G|2760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NWY_110 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.2777

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

1NWY|1|0|U|2615
1NWY|1|0|U|2616
1NWY|1|0|G|2617
1NWY|1|0|A|2618
1NWY|1|0|G|2619
*
1NWY|1|0|C|2754
1NWY|1|0|A|2755
1NWY|1|0|A|2756
1NWY|1|0|G|2757
1NWY|1|0|A|2758
1NWY|1|0|U|2759
1NWY|1|0|G|2760
1NWY|1|0|A|2761
1NWY|1|0|G|2762

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain B

ribosomal protein L3

Chain H

ribosomal protein L13