IL_1NWY_111

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUGC*GUGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NWY_111 not in the Motif Atlas

Geometric match to IL_4V88_461

Geometric discrepancy: 0.3288

The information below is about IL_4V88_461

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

1NWY|1|0|U|2625
1NWY|1|0|U|2626
1NWY|1|0|G|2627
1NWY|1|0|C|2628
*
1NWY|1|0|G|2650
1NWY|1|0|U|2651
1NWY|1|0|G|2652
1NWY|1|0|A|2653

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain I

ribosomal protein L14