IL_1NWY_133

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCUAAG*CGAUGG

Length

12 nucleotides

Bulged bases

1NWY|1|0|U|1392

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NWY_133 not in the Motif Atlas

Geometric match to IL_7A0S_098

Geometric discrepancy: 0.2945

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

1NWY|1|0|C|1363
1NWY|1|0|C|1364
1NWY|1|0|U|1365
1NWY|1|0|A|1366
1NWY|1|0|A|1367
1NWY|1|0|G|1368
*
1NWY|1|0|C|1389
1NWY|1|0|G|1390
1NWY|1|0|A|1391
1NWY|1|0|U|1392
1NWY|1|0|G|1393
1NWY|1|0|G|1394

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain A

ribosomal protein L2