IL_1OLN_001

3D structure

PDB id

1OLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model for thiostrepton antibiotic binding to L11 substrate from 50S ribosomal RNA

Experimental method

SOLUTION NMR, THEORETICAL MODEL

Resolution

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

1OLN|1|C|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1OLN_001 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.1096

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

1OLN|1|C|G|1059
1OLN|1|C|U|1060
1OLN|1|C|U|1061
1OLN|1|C|G|1062
*
1OLN|1|C|C|1076
1OLN|1|C|A|1077
1OLN|1|C|U|1078
1OLN|1|C|C|1079

Current chains

Chain C

RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L11