IL_1OND_018

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

1OND|1|0|G|814, 1OND|1|0|G|818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1OND_018 not in the Motif Atlas

Geometric match to IL_7A0S_015

Geometric discrepancy: 0.2487

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

11

Unit IDs

1OND|1|0|G|687
1OND|1|0|A|688
1OND|1|0|A|689
1OND|1|0|A|690
1OND|1|0|C|691
*
1OND|1|0|G|812
1OND|1|0|A|813
1OND|1|0|G|814
1OND|1|0|A|815
1OND|1|0|U|816
1OND|1|0|A|817
1OND|1|0|G|818
1OND|1|0|C|819

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains