IL_1OND_037

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UCCCUAAA*UA

Length

10 nucleotides

Bulged bases

1OND|1|0|C|1016, 1OND|1|0|U|1019

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1OND_037 not in the Motif Atlas

Homologous match to IL_7A0S_034

Geometric discrepancy: 0.3076

The information below is about IL_7A0S_034

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_46868.1

Basepair signature

cWW-L-cWW-L-L-R-L-R

Number of instances in this motif group

5

Unit IDs

1OND|1|0|U|1015
1OND|1|0|C|1016
1OND|1|0|C|1017
1OND|1|0|C|1018
1OND|1|0|U|1019
1OND|1|0|A|1020
1OND|1|0|A|1021
1OND|1|0|A|1022
*
1OND|1|0|U|1161
1OND|1|0|A|1162

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains