IL_1OND_119

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UCUCC*GGUAG

Length

10 nucleotides

Bulged bases

1OND|1|0|U|2668, 1OND|1|0|C|2669

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1OND_119 not in the Motif Atlas

Homologous match to IL_7A0S_096

Geometric discrepancy: 0.212

The information below is about IL_7A0S_096

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

1OND|1|0|U|2666
1OND|1|0|C|2667
1OND|1|0|U|2668
1OND|1|0|C|2669
1OND|1|0|C|2670
*
1OND|1|0|G|2698
1OND|1|0|G|2699
1OND|1|0|U|2700
1OND|1|0|A|2701
1OND|1|0|G|2702

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains