IL_1Q86_106

3D structure

PDB id

1Q86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAAUCCUCUGAAG*CCAAAAUGAUCGGGA

Length

28 nucleotides

Bulged bases

1Q86|1|A|A|1123, 1Q86|1|A|A|1231, 1Q86|1|A|U|1234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q86_106 not in the Motif Atlas

Homologous match to IL_4V9F_109

Geometric discrepancy: 0.0256

The information below is about IL_4V9F_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29826.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

1Q86|1|A|U|1122
1Q86|1|A|A|1123
1Q86|1|A|A|1124
1Q86|1|A|U|1125
1Q86|1|A|C|1126
1Q86|1|A|C|1127
1Q86|1|A|U|1128
1Q86|1|A|C|1129
1Q86|1|A|U|1130
1Q86|1|A|G|1131
1Q86|1|A|A|1132
1Q86|1|A|A|1133
1Q86|1|A|G|1134
*
1Q86|1|A|C|1228
1Q86|1|A|C|1229
1Q86|1|A|A|1230
1Q86|1|A|A|1231
1Q86|1|A|A|1232
1Q86|1|A|A|1233
1Q86|1|A|U|1234
1Q86|1|A|G|1235
1Q86|1|A|A|1236
1Q86|1|A|U|1237
1Q86|1|A|C|1238
1Q86|1|A|G|1239
1Q86|1|A|G|1240
1Q86|1|A|G|1241
1Q86|1|A|A|1242

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain D

50S ribosomal protein L3P

Chain J

L10 Ribosomal Protein

Chain K

50S ribosomal protein L13P

Chain X

50S ribosomal protein L30P