IL_1QVG_078

3D structure

PDB id

1QVG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAG*CGAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1QVG_078 not in the Motif Atlas

Geometric match to IL_4V9F_080

Geometric discrepancy: 0.0535

The information below is about IL_4V9F_080

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

1QVG|1|0|C|2331
1QVG|1|0|A|2332
1QVG|1|0|G|2333
*
1QVG|1|0|C|2351
1QVG|1|0|G|2352
1QVG|1|0|A|2353
1QVG|1|0|A|2354
1QVG|1|0|G|2355

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain D

50S ribosomal protein L5P

Chain M

50S ribosomal protein L18P

Chain P

50S ribosomal protein L21e