IL_1RFR_003

3D structure

PDB id

1RFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR structure of the 30mer stemloop-D of coxsackieviral RNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUCUG*CUUUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1RFR_003 not in the Motif Atlas

Geometric match to IL_5BTM_001

Geometric discrepancy: 0.298

The information below is about IL_5BTM_001

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

1RFR|3|A|C|5
1RFR|3|A|U|6
1RFR|3|A|C|7
1RFR|3|A|U|8
1RFR|3|A|G|9
*
1RFR|3|A|C|22
1RFR|3|A|U|23
1RFR|3|A|U|24
1RFR|3|A|U|25
1RFR|3|A|G|26

Current chains

Chain A

stemloop-D RNA of the 5'-cloverleaf of coxsackievirus B3

Nearby chains