IL_1SM1_036

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

1SM1|1|0|A|1167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_036 not in the Motif Atlas

Homologous match to IL_7A0S_033

Geometric discrepancy: 0.1782

The information below is about IL_7A0S_033

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

1SM1|1|0|C|1009
1SM1|1|0|U|1010
1SM1|1|0|A|1011
1SM1|1|0|A|1012
1SM1|1|0|G|1013
*
1SM1|1|0|C|1164
1SM1|1|0|G|1165
1SM1|1|0|A|1166
1SM1|1|0|A|1167
1SM1|1|0|G|1168

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain O

50S RIBOSOMAL PROTEIN L20

Chain X

50S RIBOSOMAL PROTEIN L30