IL_1SM1_057

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

UGAGG*CGCAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_057 not in the Motif Atlas

Homologous match to IL_7A0S_049

Geometric discrepancy: 0.2204

The information below is about IL_7A0S_049

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

1SM1|1|0|U|1370
1SM1|1|0|G|1371
1SM1|1|0|A|1372
1SM1|1|0|G|1373
1SM1|1|0|G|1374
*
1SM1|1|0|C|1383
1SM1|1|0|G|1384
1SM1|1|0|C|1385
1SM1|1|0|A|1386
1SM1|1|0|G|1387

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34

Chain A

50S RIBOSOMAL PROTEIN L2

Chain Y

50S RIBOSOMAL PROTEIN L31