IL_1SM1_059

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

UGGAG*CGUUGAAA

Length

13 nucleotides

Bulged bases

1SM1|1|0|U|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_059 not in the Motif Atlas

Homologous match to IL_7A0S_050

Geometric discrepancy: 0.4519

The information below is about IL_7A0S_050

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_69229.3

Basepair signature

cWW-L-tSH-L-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

1SM1|1|0|U|1426
1SM1|1|0|G|1427
1SM1|1|0|G|1428
1SM1|1|0|A|1429
1SM1|1|0|G|1430
*
1SM1|1|0|C|1598
1SM1|1|0|G|1599
1SM1|1|0|U|1600
1SM1|1|0|U|1601
1SM1|1|0|G|1602
1SM1|1|0|A|1603
1SM1|1|0|A|1604
1SM1|1|0|A|1605

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains