IL_1SM1_139

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

GGAACUUUG*CUGUC

Length

14 nucleotides

Bulged bases

1SM1|1|0|G|1684, 1SM1|1|0|G|1975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1SM1_139 not in the Motif Atlas

Homologous match to IL_7A0S_109

Geometric discrepancy: 0.2429

The information below is about IL_7A0S_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

1SM1|1|0|G|1683
1SM1|1|0|G|1684
1SM1|1|0|A|1685
1SM1|1|0|A|1686
1SM1|1|0|C|1687
1SM1|1|0|U|1688
1SM1|1|0|U|1689
1SM1|1|0|U|1690
1SM1|1|0|G|1691
*
1SM1|1|0|C|1973
1SM1|1|0|U|1974
1SM1|1|0|G|1975
1SM1|1|0|U|1976
1SM1|1|0|C|1977

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3

Chain I

50S RIBOSOMAL PROTEIN L14