IL_1ULL_008

3D structure

PDB id

1ULL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNA APTAMER COMPLEXED WITH HIV-1 REV PEPTIDE, NMR, 7 STRUCTURES

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GGAC*GAAAC

Length

9 nucleotides

Bulged bases

1ULL|4|A|A|29

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1ULL_008 not in the Motif Atlas

Geometric match to IL_6DLR_005

Geometric discrepancy: 0.3558

The information below is about IL_6DLR_005

Detailed Annotation

tWW and near cWH

Broad Annotation

tWW and near cWH

Motif group

IL_45860.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

1ULL|4|A|G|5
1ULL|4|A|G|6
1ULL|4|A|A|7
1ULL|4|A|C|8
*
1ULL|4|A|G|27
1ULL|4|A|A|28
1ULL|4|A|A|29
1ULL|4|A|A|30
1ULL|4|A|C|31

Current chains

Chain A

RNA (5'-R (GP*GP*CP*UP*GP*GP*AP*CP*UP*CP*GP*UP*AP*CP*UP*UP*CP*GP* GP*UP*AP*CP*UP*GP*GP*AP*GP*AP*AP*AP*CP*AP*GP*CP*C)-3')

Nearby chains

Chain B

REV PEPTIDE