IL_1VFG_001
3D structure
- PDB id
- 1VFG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- AGGGGC*GCCCCU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VFG_001 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.2854
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.2
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
1VFG|1|C|A|5
1VFG|1|C|G|6
1VFG|1|C|G|7
1VFG|1|C|G|49
1VFG|1|C|G|50
1VFG|1|C|C|51
*
1VFG|1|C|G|63
1VFG|1|C|C|64
1VFG|1|C|C|65
1VFG|1|C|C|66
1VFG|1|C|C|67
1VFG|1|C|U|68
Current chains
- Chain C
- RNA (75-MER)
Nearby chains
- Chain A
- poly A polymerase
Coloring options: