IL_1VQ5_089

3D structure

PDB id

1VQ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAA' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUGAC*GGAAAAGAG

Length

14 nucleotides

Bulged bases

1VQ5|1|0|G|2815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQ5_089 not in the Motif Atlas

Geometric match to IL_5J7L_345

Geometric discrepancy: 0.2578

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

1VQ5|1|0|C|2672
1VQ5|1|0|U|2673
1VQ5|1|0|G|2674
1VQ5|1|0|A|2675
1VQ5|1|0|C|2676
*
1VQ5|1|0|G|2809
1VQ5|1|0|G|2810
1VQ5|1|0|A|2811
1VQ5|1|0|A|2812
1VQ5|1|0|A|2813
1VQ5|1|0|A|2814
1VQ5|1|0|G|2815
1VQ5|1|0|A|2816
1VQ5|1|0|G|2817

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain B

50S ribosomal protein L3P

Chain J

50S ribosomal protein L13P