IL_1VQ5_106
3D structure
- PDB id
- 1VQ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the transition state analogue 'RAA' bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UAAUCCUCUGAAG*CCAAAAUGAUCGGGA
- Length
- 28 nucleotides
- Bulged bases
- 1VQ5|1|0|A|1123, 1VQ5|1|0|A|1231, 1VQ5|1|0|U|1234
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VQ5_106 not in the Motif Atlas
- Homologous match to IL_4V9F_109
- Geometric discrepancy: 0.0213
- The information below is about IL_4V9F_109
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_29826.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
1VQ5|1|0|U|1122
1VQ5|1|0|A|1123
1VQ5|1|0|A|1124
1VQ5|1|0|U|1125
1VQ5|1|0|C|1126
1VQ5|1|0|C|1127
1VQ5|1|0|U|1128
1VQ5|1|0|C|1129
1VQ5|1|0|U|1130
1VQ5|1|0|G|1131
1VQ5|1|0|A|1132
1VQ5|1|0|A|1133
1VQ5|1|0|G|1134
*
1VQ5|1|0|C|1228
1VQ5|1|0|C|1229
1VQ5|1|0|A|1230
1VQ5|1|0|A|1231
1VQ5|1|0|A|1232
1VQ5|1|0|A|1233
1VQ5|1|0|U|1234
1VQ5|1|0|G|1235
1VQ5|1|0|A|1236
1VQ5|1|0|U|1237
1VQ5|1|0|C|1238
1VQ5|1|0|G|1239
1VQ5|1|0|G|1240
1VQ5|1|0|G|1241
1VQ5|1|0|A|1242
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 9
- 5S ribosomal RNA; 5S rRNA
- Chain B
- 50S ribosomal protein L3P
- Chain H
- 50S RIBOSOMAL PROTEIN L10E
- Chain J
- 50S ribosomal protein L13P
- Chain W
- 50S ribosomal protein L30P
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