IL_1VQK_090
3D structure
- PDB id
- 1VQK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- CUGAC*GGAAAAGAG
- Length
- 14 nucleotides
- Bulged bases
- 1VQK|1|0|G|2815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VQK_090 not in the Motif Atlas
- Geometric match to IL_5J7L_345
- Geometric discrepancy: 0.258
- The information below is about IL_5J7L_345
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.3
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
1VQK|1|0|C|2672
1VQK|1|0|U|2673
1VQK|1|0|G|2674
1VQK|1|0|A|2675
1VQK|1|0|C|2676
*
1VQK|1|0|G|2809
1VQK|1|0|G|2810
1VQK|1|0|A|2811
1VQK|1|0|A|2812
1VQK|1|0|A|2813
1VQK|1|0|A|2814
1VQK|1|0|G|2815
1VQK|1|0|A|2816
1VQK|1|0|G|2817
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain B
- 50S ribosomal protein L3P
- Chain J
- 50S ribosomal protein L13P
Coloring options: