IL_1VQM_018

3D structure

PDB id

1VQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DAN' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CUCG*CACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQM_018 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2016

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

1VQM|1|0|C|558
1VQM|1|0|U|559
1VQM|1|0|C|560
1VQM|1|0|G|561
*
1VQM|1|0|C|596
1VQM|1|0|A|597
1VQM|1|0|C|598
1VQM|1|0|G|599

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain Y

50S ribosomal protein L32E