IL_1VQM_107
3D structure
- PDB id
- 1VQM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the transition state analogue 'DAN' bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- UAAUCCUCUGAAG*CCAAAAUGAUCGGGA
- Length
- 28 nucleotides
- Bulged bases
- 1VQM|1|0|A|1123, 1VQM|1|0|A|1231, 1VQM|1|0|U|1234
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VQM_107 not in the Motif Atlas
- Homologous match to IL_4V9F_109
- Geometric discrepancy: 0.0424
- The information below is about IL_4V9F_109
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_39721.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
1VQM|1|0|U|1122
1VQM|1|0|A|1123
1VQM|1|0|A|1124
1VQM|1|0|U|1125
1VQM|1|0|C|1126
1VQM|1|0|C|1127
1VQM|1|0|U|1128
1VQM|1|0|C|1129
1VQM|1|0|U|1130
1VQM|1|0|G|1131
1VQM|1|0|A|1132
1VQM|1|0|A|1133
1VQM|1|0|G|1134
*
1VQM|1|0|C|1228
1VQM|1|0|C|1229
1VQM|1|0|A|1230
1VQM|1|0|A|1231
1VQM|1|0|A|1232
1VQM|1|0|A|1233
1VQM|1|0|U|1234
1VQM|1|0|G|1235
1VQM|1|0|A|1236
1VQM|1|0|U|1237
1VQM|1|0|C|1238
1VQM|1|0|G|1239
1VQM|1|0|G|1240
1VQM|1|0|G|1241
1VQM|1|0|A|1242
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 9
- 5S ribosomal RNA; 5S rRNA
- Chain B
- 50S ribosomal protein L3P
- Chain H
- 50S RIBOSOMAL PROTEIN L10E
- Chain J
- 50S ribosomal protein L13P
- Chain W
- 50S ribosomal protein L30P
Coloring options: