IL_1VQO_048

3D structure

PDB id

1VQO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

GAUGGAAG*UGGAC

Length

13 nucleotides

Bulged bases

1VQO|1|0|G|1315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQO_048 not in the Motif Atlas

Homologous match to IL_4V9F_048

Geometric discrepancy: 0.0333

The information below is about IL_4V9F_048

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

1VQO|1|0|G|1312
1VQO|1|0|A|1313
1VQO|1|0|U|1314
1VQO|1|0|G|1315
1VQO|1|0|G|1316
1VQO|1|0|A|1317
1VQO|1|0|A|1318
1VQO|1|0|G|1319
*
1VQO|1|0|U|1338
1VQO|1|0|G|1339
1VQO|1|0|G|1340
1VQO|1|0|A|1341
1VQO|1|0|C|1342

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain C

50S ribosomal protein L4E

Chain Y

50S ribosomal protein L32E