IL_1VQO_090

3D structure

PDB id

1VQO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

CUGAC*GGAAAAGAG

Length

14 nucleotides

Bulged bases

1VQO|1|0|G|2815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQO_090 not in the Motif Atlas

Geometric match to IL_5J7L_345

Geometric discrepancy: 0.2588

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

1VQO|1|0|C|2672
1VQO|1|0|U|2673
1VQO|1|0|G|2674
1VQO|1|0|A|2675
1VQO|1|0|C|2676
*
1VQO|1|0|G|2809
1VQO|1|0|G|2810
1VQO|1|0|A|2811
1VQO|1|0|A|2812
1VQO|1|0|A|2813
1VQO|1|0|A|2814
1VQO|1|0|G|2815
1VQO|1|0|A|2816
1VQO|1|0|G|2817

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain B

50S ribosomal protein L3P

Chain J

50S ribosomal protein L13P