IL_1VVJ_182

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

ACCC*GUU

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_182 not in the Motif Atlas

Geometric match to IL_8E0F_001

Geometric discrepancy: 0.3525

The information below is about IL_8E0F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09990.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

1VVJ|1|XA|A|185
1VVJ|1|XA|C|186
1VVJ|1|XA|C|186|||A
1VVJ|1|XA|C|186|||B
*
1VVJ|1|XA|G|191|||E
1VVJ|1|XA|U|191|||F
1VVJ|1|XA|U|192

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20