Motif IL_09990.1 Version IL_09990.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V87_185 | 4V87 | 0.7113 | 0 | BB | tRNA | G | 46 | C | 47 | C | 48 | C | 49 | * | G | 55 | G | 56 | C | 57 | cWW | ncWW | ncWW | ||
| 2 | IL_4WSM_372 | 4WSM | 0.6317 | 0 | 1K | tRNA | G | 46 | C | 47 | C | 48 | C | 49 | * | G | 55 | G | 56 | C | 57 | cWW | ncWW | ncWW | ||
| 3 | IL_8E4X_002 | 8E4X | 0.0000 | 1 | D+C | RNA (32-mer) | C | 19 | C | 20 | 4DU | 21 | G | 22 | * | C | 11 | G | 12 | G | 14 | cWW | cWH | cWW | ||
| 4 | IL_8E0F_001 | 8E0F | 0.1298 | 1 | D+C | RNA (32-mer) | C | 19 | C | 20 | G | 21 | G | 22 | * | C | 11 | G | 12 | G | 14 | cWW | cWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCCC*GGC | 2 |
| CC(4DU)G*CG(8AZ)G | 1 |
| CCGG*CG(8AZ)G | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CC*G | 2 |
| C(4DU)*G(8AZ) | 1 |
| CG*G(8AZ) | 1 |
- Annotations
-
- (4)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.13 | Avg 0.41 | Max 0.79
Coloring options: