IL_1VVJ_220

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_220 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1358

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

1VVJ|1|XA|C|1303
1VVJ|1|XA|G|1304
1VVJ|1|XA|G|1305
1VVJ|1|XA|A|1306
1VVJ|1|XA|U|1307
1VVJ|1|XA|U|1308
*
1VVJ|1|XA|A|1329
1VVJ|1|XA|U|1330
1VVJ|1|XA|G|1331
1VVJ|1|XA|A|1332
1VVJ|1|XA|A|1333
1VVJ|1|XA|G|1334

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XM

30S ribosomal protein S13

Chain XU

30S ribosomal protein S21