IL_1VWW_008

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGCUCC*GCCCG

Length

11 nucleotides

Bulged bases

1VWW|1|5|C|264, 1VWW|1|5|C|265, 1VWW|1|5|C|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34098.1

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

19

Unit IDs

1VWW|1|5|C|168
1VWW|1|5|G|169
1VWW|1|5|C|170
1VWW|1|5|U|171
1VWW|1|5|C|172
1VWW|1|5|C|173
*
1VWW|1|5|G|263
1VWW|1|5|C|264
1VWW|1|5|C|265
1VWW|1|5|C|266
1VWW|1|5|G|267

Current chains

Chain 5

28S ribosomal RNA

Nearby chains