Motif IL_34098.1 Version IL_34098.1 of this group appears in releases 1.17 to 1.17

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)		1		2		3		4	break		5		6		7	1-7	2-6	3-4	3-5	3-6	4-5	4-6
1	IL_4A1B_093	4A1B	0.3462	0	1	G	2386	C	2387	G	2388	G	2389	*	U	2974	A	2975	C	2976	cWW	cWW	cSH			cWW
2	IL_4CUV_099	4CUV	0.3146	0	1	G	2391	C	2392	G	2393	G	2394	*	U	2986	A	2987	C	2988	cWW	ncWW	cSH			cWW
3	IL_3U5H_096	3U5H	0.3033	0	5	G	2391	C	2392	G	2393	G	2394	*	U	2986	A	2987	C	2988	cWW	cWW	cSH			cWW
4	IL_1VX6_098	1VX6	0.2981	0	A	G	2684	C	2685	G	2686	G	2687	*	U	3345	A	3346	C	3347	cWW	cWW	cSH			cWW
5	IL_4CUV_015	4CUV	0.2606	1	1	G	237	A	238	G	239	G	241	*	U	177	U	178	C	179	cWW	ncWW	ncSH			cWW
6	IL_1VW3_032	1VW3	0.0000	0	A	A	919	A	920	G	921	A	922	*	U	1179	C	1180	U	1181	cWW	ncWWa				cWW
7	IL_4IOA_061	4IOA	0.3697	1	X	G	1503	G	1504	U	1505	A	1507	*	U	1515	A	1516	C	1517	cWW	cWW	ncWH			cWW
8	IL_4QCN_090	4QCN	0.3106	0	A	C	2468	U	2469	G	2470	A	2471	*	U	2505	G	2506	G	2507	cWW	ncWW		ntSH		cWW
9	IL_4A1B_089	4A1B	0.4334	1	1	G	2201	A	2202	A	2203	G	2205	*	C	2230	G	2231	C	2232	cWW	ncWW	ncSH			cWW
10	IL_4CUV_071	4CUV	0.4587	0	1	G	1618	A	1619	U	1620	A	1621	*	U	1824	G	1825	C	1826	cWW				ncSW	cWW
11	IL_1VW3_056	1VW3	0.5070	0	A	A	1754	A	1755	U	1756	A	1757	*	U	1793	U	1794	U	1795	cWW					cWW
12	IL_1VX6_107	1VX6	0.6743	1	A	U	3109	A	3110	U	3112	U	3113	*	A	3145	U	3146	A	3147	cWW					cWW
13	IL_1VW3_029	1VW3	0.6092	0	A	U	818	U	819	U	820	U	821	*	G	805	G	806	A	807	cWW				ncWW	cWW
14	IL_1S72_053	1S72	0.7481	0	0	G	1475	A	1476	C	1477	U	1478	*	A	1465	C	1466	C	1467	cWW				cBW	cWW
15	IL_1VWW_025	1VWW	0.6390	-2	5	G	482	G	483	U	484	C	486	*	G	670	G	671	C	672	cWW			ncBW
16	IL_1VX2_011	1VX2	0.7720	0	2	G	338	A	339	C	340	C	341	*	G	123	U	124	C	125	ncWW					cWW
17	IL_1VWW_008	1VWW	0.8067	4	5	U	273	C	274	C	275	C	276	*	G	160	G	161	A	162	cWW					cWW
18	IL_1X8W_009	1X8W	0.7588	0	A	G	331	U	403	U	404	G	405	*	C	316	U	317	C	318	cWW					cWW
19	IL_1VX6_009	1VX6	0.6903	0	A	C	255	A	256	U	257	U	258	*	A	173	U	174	G	175	cWW					cWW	ncWw

3D structures

Complete motif including flanking bases

Sequence	Counts
GCGG*UAC	4
UUC*GAGUG	1
AAGA*UCU	1
GGUCA*UAC	1
CUGA*UGG	1
GAAUG*CGC	1
GAUA*UGC	1
AAUA*UUU	1
UAUUU*AUA	1
UUUU*GGA	1
GACU*ACC	1
GCC*GC	1
GUC*GACC	1
CGCUCC*GCCCG	1
GUUG*CUC	1
CAUU*AUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
CG*A	4
AU*U	2
U*AGU	1
AG*C	1
GUC*A	1
UG*G	1
AAU*G	1
AU*G	1
AUU*U	1
UU*G	1
AC*C	1
C*	1
U*AC	1
GCUC*CCC	1
UU*U	1

Release history

Release	1.17
Date	2014-09-04
Status	New id, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_34098.1	Only in the parent motif
IL_77277.1 Compare	IL_1X8W_009, IL_1VW3_056, IL_1S72_053, IL_4CUV_099, IL_4CUV_015, IL_4CUV_071, IL_3U5H_096, IL_1VW3_032, IL_4A1B_089, IL_4IOA_061, IL_1VW3_029, IL_4A1B_093	IL_1VX2_011, IL_1VX6_009, IL_4QCN_090, IL_1VX6_098, IL_1VWW_008, IL_1VWW_025, IL_1VX6_107	IL_3Q1Q_006, IL_3U5H_071, IL_4NVV_089, IL_1J2B_003

Children motifs

Child motif	Common motif instances	Only in IL_34098.1	Only in the child motif
IL_34098.2 Compare	IL_1X8W_009, IL_1VW3_056, IL_1S72_053, IL_4CUV_099, IL_4A1B_093, IL_4CUV_071, IL_4QCN_090, IL_1VX6_107, IL_3U5H_096, IL_1VW3_032, IL_4A1B_089, IL_4IOA_061, IL_1VW3_029, IL_4CUV_015, IL_1VX6_009	IL_1VX6_098, IL_1VWW_025, IL_1VWW_008, IL_1VX2_011	IL_4W21_135, IL_4W21_146, IL_4W21_128, IL_1J2B_003, IL_4W23_025, IL_3U5H_071
IL_84401.1 Compare	IL_1VX6_098	IL_1X8W_009, IL_1VX2_011, IL_1VW3_056, IL_1S72_053, IL_4CUV_099, IL_4A1B_093, IL_4CUV_071, IL_4QCN_090, IL_1VX6_107, IL_1VWW_025, IL_3U5H_096, IL_1VWW_008, IL_1VW3_032, IL_4A1B_089, IL_4IOA_061, IL_1VW3_029, IL_4CUV_015, IL_1VX6_009	IL_3E5C_001, IL_1S72_072

Annotations: (19)
Basepair signature: cWW-cWW-L-cWW
Heat map statistics: Min 0.08 | Avg 0.55 | Max 0.90

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Coloring options: Nucleotide numbers

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