IL_1VWW_013

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAC*GAGUUCAAGAGGGC

Length

18 nucleotides

Bulged bases

1VWW|1|5|G|409, 1VWW|1|5|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61513.1

Basepair signature

cWW-cWW

Number of instances in this motif group

4

Unit IDs

1VWW|1|5|G|387
1VWW|1|5|A|388
1VWW|1|5|A|389
1VWW|1|5|C|390
*
1VWW|1|5|G|401
1VWW|1|5|A|402
1VWW|1|5|G|403
1VWW|1|5|U|404
1VWW|1|5|U|405
1VWW|1|5|C|406
1VWW|1|5|A|407
1VWW|1|5|A|408
1VWW|1|5|G|409
1VWW|1|5|A|410
1VWW|1|5|G|411
1VWW|1|5|G|412
1VWW|1|5|G|413
1VWW|1|5|C|414

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA