Motif IL_61513.1 Version IL_61513.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-3 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2OZB_001 | 2OZB | 0.3573 | 1 | Single bulged A | C | RNA comprising the 5' Stem-Loop RNA of U4snRNA | U | 24 | G | 26 | * | C | 47 | G | 48 | cWW | cWW | |
| 2 | IL_3U5H_046 | 3U5H | 0.0000 | 2 | 5 | 25S rRNA | U | 1015 | G | 1018 | * | U | 1034 | G | 1035 | cWW | cWW | ||
| 3 | IL_4IOA_067 | 4IOA | 0.4216 | 2 | Multiple bulged bases | X | LSU rRNA | U | 1881 | A | 1884 | * | U | 1833 | G | 1834 | ntWH | cWW | cWW |
| 4 | IL_1VWW_013 | 1VWW | 0.7121 | 4 | 5 | 28S ribosomal RNA | U | 184 | G | 189 | * | C | 252 | G | 253 | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAG*CG | 1 |
| UCCG*UG | 1 |
| UGAA*UG | 1 |
| UCGUGG*CG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A* | 1 |
| CC* | 1 |
| GA* | 1 |
| CGUG* | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_61513.1 | Only in the parent motif |
|---|---|---|---|
| IL_09698.1 Compare | IL_2OZB_001, IL_3U5H_046 | IL_4IOA_067, IL_1VWW_013 | IL_1KXK_001, IL_4A1B_032, IL_2QBG_032 |
| IL_84950.1 Compare | IL_4IOA_067 | IL_2OZB_001, IL_1VWW_013, IL_3U5H_046 | IL_387D_001, IL_4CUX_087, IL_1U9S_008, IL_1KXK_003, IL_4NVV_072, IL_1XOK_001, IL_1XOK_002, IL_3U5F_086 |
Children motifs
| Child motif | Common motif instances | Only in IL_61513.1 | Only in the child motif |
|---|---|---|---|
| IL_68139.1 Compare | IL_2OZB_001, IL_3U5H_046 | IL_4IOA_067, IL_1VWW_013 | IL_4KR7_001 |
| IL_68638.1 Compare | IL_4IOA_067 | IL_2OZB_001, IL_1VWW_013, IL_3U5H_046 | IL_2QBG_086, IL_387D_001, IL_4CUX_087, IL_1XOK_001, IL_1U9S_008, IL_4KZD_006, IL_1KXK_003, IL_4CUV_067, IL_4W21_013, IL_1XOK_002, IL_3U5F_086 |
- Annotations
-
- Single bulged A (1)
- Multiple bulged bases (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.36 | Avg 0.41 | Max 0.71
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