IL_1VWW_027

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAGGUGGCUCGG*CCGAGUGUUACAGC

Length

27 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01551.1

Basepair signature

cWW-L-R-R-R-R-R-L-L-L-cWW

Number of instances in this motif group

6

Unit IDs

1VWW|1|5|G|745
1VWW|1|5|A|746
1VWW|1|5|A|747
1VWW|1|5|G|748
1VWW|1|5|G|749
1VWW|1|5|U|750
1VWW|1|5|G|751
1VWW|1|5|G|752
1VWW|1|5|C|753
1VWW|1|5|U|754
1VWW|1|5|C|755
1VWW|1|5|G|756
1VWW|1|5|G|757
*
1VWW|1|5|C|906
1VWW|1|5|C|907
1VWW|1|5|G|908
1VWW|1|5|A|909
1VWW|1|5|G|910
1VWW|1|5|U|911
1VWW|1|5|G|912
1VWW|1|5|U|913
1VWW|1|5|U|914
1VWW|1|5|A|915
1VWW|1|5|C|916
1VWW|1|5|A|917
1VWW|1|5|G|918
1VWW|1|5|C|919

Current chains

Chain 5

28S ribosomal RNA

Nearby chains